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SRR8992360 Sample ID 2351
| Paper identifier | Stengel2019histone |
| SRP accession | SRP194280 |
| GEO accession | GSE130502 |
| Samples | SRR8992360 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | Luciferase/Gal4/NeoR/GFP |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | SUDHL4 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -3 hr | 0 hr | 3 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 75 |
| Read depth after trimming | 74,139,679 |
| Duplication proportion | 0.63372 |
| Proportion reads mapped | 0.8705 |
| Exon/intron ratio | 3.32927 |
| Unique read proportion | 0.61139 |
| Total # Tfit bidirectionals | 36344 |
| # Promoter Tfit bidirectionals | 10948 |
| # Intronic Tfit bidirectionals | 16969 |
| # Intergenic Tfit bidirectionals | 7654 |
| Total # dREG bidirectionals | 31369 |
| # Promoter dREG bidirectionals | 8091 |
| # Intronic dREG bidirectionals | 15239 |
| # Intergenic dREG bidirectionals | 7308 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |