DBNascent | Samples

SRR8992361 Sample ID 2352

**Data sources**
Paper identifier	Stengel2019histone
SRP accession	SRP194280
GEO accession	GSE130502
Samples	SRR8992361

**Technical details**
QC score	3
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	Luciferase/Gal4/NeoR/GFP
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	140 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	SUDHL4
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	RGFP966 (10 microM)	-3 hr	0 hr	3 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	75
Read depth after trimming	66,698,954
Duplication proportion	0.68175
Proportion reads mapped	0.8755
Exon/intron ratio	3.02806
Unique read proportion	0.56299

**Bidirectionals**
Total # Tfit bidirectionals	38004
# Promoter Tfit bidirectionals	9844
# Intronic Tfit bidirectionals	17963
# Intergenic Tfit bidirectionals	8878
Total # dREG bidirectionals	29236
# Promoter dREG bidirectionals	8501
# Intronic dREG bidirectionals	13411
# Intergenic dREG bidirectionals	6946
Part of Tfit master merge?	True
Part of dREG master merge?	True