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SRR8992365 Sample ID 2356
| Paper identifier | Stengel2019histone |
| SRP accession | SRP194280 |
| GEO accession | GSE130502 |
| Samples | SRR8992365 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | Luciferase/Gal4/NeoR/GFP |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 123 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1002 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | OCILY1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -3 hr | 0 hr | 3 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 51 |
| Read depth after trimming | 44,516,585 |
| Duplication proportion | 0.5413 |
| Proportion reads mapped | 0.8273 |
| Exon/intron ratio | 3.37241 |
| Unique read proportion | 0.62393 |
| Total # Tfit bidirectionals | 29696 |
| # Promoter Tfit bidirectionals | 12060 |
| # Intronic Tfit bidirectionals | 12464 |
| # Intergenic Tfit bidirectionals | 5076 |
| Total # dREG bidirectionals | 22994 |
| # Promoter dREG bidirectionals | 8254 |
| # Intronic dREG bidirectionals | 9998 |
| # Intergenic dREG bidirectionals | 4520 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |