DBNascent | Samples

SRR8992365 Sample ID 2356

**Data sources**
Paper identifier	Stengel2019histone
SRP accession	SRP194280
GEO accession	GSE130502
Samples	SRR8992365

**Technical details**
QC score	2
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	Luciferase/Gal4/NeoR/GFP
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	123 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1002 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	OCILY1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-3 hr	0 hr	3 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	51
Read depth after trimming	44,516,585
Duplication proportion	0.5413
Proportion reads mapped	0.8273
Exon/intron ratio	3.37241
Unique read proportion	0.62393

**Bidirectionals**
Total # Tfit bidirectionals	29696
# Promoter Tfit bidirectionals	12060
# Intronic Tfit bidirectionals	12464
# Intergenic Tfit bidirectionals	5076
Total # dREG bidirectionals	22994
# Promoter dREG bidirectionals	8254
# Intronic dREG bidirectionals	9998
# Intergenic dREG bidirectionals	4520
Part of Tfit master merge?	True
Part of dREG master merge?	True