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SRR9007616 Sample ID 706
| Paper identifier | Etchegaray2019histone |
| SRP accession | SRP194939 |
| GEO accession | GSE130691 |
| Samples | SRR9007616 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | D. melanogaster |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 161 Mb |
| Stranded gene read counts | TXT file | 929 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | |
| Strain | 129/Sv |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 1 |
| Sample NRO score | 3 |
| Raw read length | 80 |
| Read depth after trimming | 62,616,710 |
| Duplication proportion | 0.43789 |
| Proportion reads mapped | 0.6687 |
| Exon/intron ratio | 5.21106 |
| Unique read proportion | 0.65453 |
| Total # Tfit bidirectionals | 32176 |
| # Promoter Tfit bidirectionals | 9037 |
| # Intronic Tfit bidirectionals | 11135 |
| # Intergenic Tfit bidirectionals | 9361 |
| Total # dREG bidirectionals | 31317 |
| # Promoter dREG bidirectionals | 7512 |
| # Intronic dREG bidirectionals | 11173 |
| # Intergenic dREG bidirectionals | 9364 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |