DBNascent | Samples

SRR9032556 Sample ID 2334

**Data sources**
Paper identifier	Steinparzer2019transcriptional
SRP accession	SRP197255
GEO accession
Samples	SRR9032556

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	random primed
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	60 Mb
Stranded gene read counts	TXT file	916 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	647 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MEF
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	cortistatin A (100 nM)	-60 min	0 min	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	151
Read depth after trimming	90,092,436
Duplication proportion	0.77901
Proportion reads mapped	0.4181
Exon/intron ratio	4.9415
Unique read proportion	0.32823

**Bidirectionals**
Total # Tfit bidirectionals	18990
# Promoter Tfit bidirectionals	6021
# Intronic Tfit bidirectionals	7389
# Intergenic Tfit bidirectionals	2805
Total # dREG bidirectionals	14749
# Promoter dREG bidirectionals	4276
# Intronic dREG bidirectionals	5269
# Intergenic dREG bidirectionals	2322
Part of Tfit master merge?	True
Part of dREG master merge?	True