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SRR9032561 Sample ID 2337
| Paper identifier | Steinparzer2019transcriptional |
| SRP accession | SRP197255 |
| GEO accession | |
| Samples | SRR9032561 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 201 Mb |
| Stranded gene read counts | TXT file | 931 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | MEF |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 76 |
| Read depth after trimming | 165,190,033 |
| Duplication proportion | 0.7473 |
| Proportion reads mapped | 0.7163 |
| Exon/intron ratio | 3.08474 |
| Unique read proportion | 0.48449 |
| Total # Tfit bidirectionals | 30737 |
| # Promoter Tfit bidirectionals | 10027 |
| # Intronic Tfit bidirectionals | 9699 |
| # Intergenic Tfit bidirectionals | 7820 |
| Total # dREG bidirectionals | 31258 |
| # Promoter dREG bidirectionals | 4546 |
| # Intronic dREG bidirectionals | 13952 |
| # Intergenic dREG bidirectionals | 8934 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |