DBNascent | Samples

SRR9032562 Sample ID 2338

**Data sources**
Paper identifier	Steinparzer2019transcriptional
SRP accession	SRP197255
GEO accession
Samples	SRR9032562

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	random primed
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	53 Mb
Stranded gene read counts	TXT file	917 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	612 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MEF
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	151
Read depth after trimming	78,413,343
Duplication proportion	0.76657
Proportion reads mapped	0.3618
Exon/intron ratio	3.73228
Unique read proportion	0.37288

**Bidirectionals**
Total # Tfit bidirectionals	18098
# Promoter Tfit bidirectionals	6141
# Intronic Tfit bidirectionals	6922
# Intergenic Tfit bidirectionals	2588
Total # dREG bidirectionals	13975
# Promoter dREG bidirectionals	4509
# Intronic dREG bidirectionals	4844
# Intergenic dREG bidirectionals	1988
Part of Tfit master merge?	True
Part of dREG master merge?	True