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SRR9051602 Sample ID 2504
| Paper identifier | Ueberschar2019ben |
| SRP accession | SRP198347 |
| GEO accession | GSE131160 |
| Samples | SRR9051602 |
| QC score | 5 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 22 Mb |
| Stranded gene read counts | TXT file | 711 Kb |
| All data files | ZIP archive | |
| Organism | D. melanogaster |
| Sample type | tissue |
| Cell type | embryo |
| Clone/Individual | |
| Strain | |
| Genotype | elba1 mut |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 5 |
| Sample NRO score | 1 |
| Raw read length | 51 |
| Read depth after trimming | 3,382,281 |
| Duplication proportion | 0.49747 |
| Proportion reads mapped | 0.5641 |
| Exon/intron ratio | 2.59763 |
| Unique read proportion | 0.25554 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |