SRR9051610 Sample ID 2512

Data sources
Paper identifier Ueberschar2019ben
SRP accession SRP198347
GEO accession GSE131160
Samples SRR9051610
Technical details
QC score 5
Replicate 1
Protocol PRO-seq
Library prep ligation
Spike-in None
Single/Paired end single
Raw strandedness reverse
Reverse complemented? True
Mapped strandedness forward
Timecourse False
Control/Experimental control
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 24 Mb
Stranded gene read counts TXT file 718 Kb
Unstranded bidirectional read counts TXT file
Tfit bidirectional regions BED file
dREG bidirectional regions BED file
All data files ZIP archive
Cellular details
Organism D. melanogaster
Sample type tissue
Cell type embryo
Clone/Individual
Strain yw
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
no treatment None None None
Extended notes
Pipeline info and software versions
Sample notes
Analysis notes
Sample metrics
Sample QC score 5
Sample NRO score 2
Raw read length 51
Read depth after trimming 5,109,764
Duplication proportion 0.57656
Proportion reads mapped 0.6681
Exon/intron ratio 3.03202
Unique read proportion 0.26945
Bidirectionals
Total # Tfit bidirectionals None
# Promoter Tfit bidirectionals None
# Intronic Tfit bidirectionals None
# Intergenic Tfit bidirectionals None
Total # dREG bidirectionals None
# Promoter dREG bidirectionals None
# Intronic dREG bidirectionals None
# Intergenic dREG bidirectionals None
Part of Tfit master merge? False
Part of dREG master merge? False