DBNascent | Samples

SRR915731 Sample ID 1430

**Data sources**
Paper identifier	Le2013mapping
SRP	SRP026204
Samples	SRR915731

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	55 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	519 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual	clone C4-12
Strain
Genotype	ER-beta flag (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	MCF7 C4-12 clonal line has been propagated to lose expression of ERalpha (not sure if specific mutations or epigenetically)
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	39
Read depth after trimming	22,691,334
Duplication proportion	0.60813
Proportion reads mapped	0.7178
Exon/intron ratio	2.14416
Unique read proportion	0.47905

**Bidirectionals**
Total # Tfit bidirectionals	23158
# Promoter Tfit bidirectionals	11620
# Intronic Tfit bidirectionals	8972
# Intergenic Tfit bidirectionals	1867
Total # dREG bidirectionals	12018
# Promoter dREG bidirectionals	7513
# Intronic dREG bidirectionals	3277
# Intergenic dREG bidirectionals	1270
Part of Tfit master merge?	True
Part of dREG master merge?	True