DBNascent | Samples

SRR915733 Sample ID 1433

**Data sources**
Paper identifier	Le2013mapping
SRP accession	SRP026204
GEO accession	GSE48159
Samples	SRR915733

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	53 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	481 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual	clone C4-12
Strain
Genotype	ER-beta flag (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (10 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes	MCF7 C4-12 clonal line has been propagated to lose expression of ERalpha (not sure if specific mutations or epigenetically)
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	39
Read depth after trimming	23,901,008
Duplication proportion	0.69147
Proportion reads mapped	0.8149
Exon/intron ratio	2.02377
Unique read proportion	0.42431

**Bidirectionals**
Total # Tfit bidirectionals	20299
# Promoter Tfit bidirectionals	10020
# Intronic Tfit bidirectionals	7843
# Intergenic Tfit bidirectionals	1686
Total # dREG bidirectionals	11159
# Promoter dREG bidirectionals	6892
# Intronic dREG bidirectionals	2987
# Intergenic dREG bidirectionals	1242
Part of Tfit master merge?	True
Part of dREG master merge?	True