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SRR9304731 Sample ID 767
| Paper identifier | Fant2020tfiid |
| SRP accession | SRP201480 |
| GEO accession | GSE132764 |
| Samples | SRR9304731 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HCT116 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | mock treatment | -1 hr | 0 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | Mock treatment means cells exposed to same electroporation pulse as treated cells; Cites Mahat2016mammalian for protocol and library prep |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 76 |
| Read depth after trimming | 132,287,922 |
| Duplication proportion | 0.56664 |
| Proportion reads mapped | 0.9545 |
| Exon/intron ratio | 3.33253 |
| Unique read proportion | 0.68298 |
| Total # Tfit bidirectionals | 38880 |
| # Promoter Tfit bidirectionals | 14602 |
| # Intronic Tfit bidirectionals | 14150 |
| # Intergenic Tfit bidirectionals | 9377 |
| Total # dREG bidirectionals | 38933 |
| # Promoter dREG bidirectionals | 7063 |
| # Intronic dREG bidirectionals | 18237 |
| # Intergenic dREG bidirectionals | 11369 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |