DBNascent | Samples

SRR930670 Sample ID 1138

**Data sources**
Paper identifier	Kaikkonen2013remodeling
SRP accession	SRP026695
GEO accession	GSE48759
Samples	SRR930670

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	45 Mb
Stranded gene read counts	TXT file	910 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	838 Kb
dREG bidirectional regions	BED file	321 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	Kdo2-Lipid A (100 ng/mL)	-10 min	0 min	10 min
treatment	serum starvation (0.5% FBS)	-850 min	0 min	850 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	53
Read depth after trimming	14,784,417
Duplication proportion	0.4799
Proportion reads mapped	0.8617
Exon/intron ratio	3.46129
Unique read proportion	0.54398

**Bidirectionals**
Total # Tfit bidirectionals	9815
# Promoter Tfit bidirectionals	3363
# Intronic Tfit bidirectionals	3391
# Intergenic Tfit bidirectionals	1703
Total # dREG bidirectionals	7443
# Promoter dREG bidirectionals	2727
# Intronic dREG bidirectionals	2476
# Intergenic dREG bidirectionals	1562
Part of Tfit master merge?	True
Part of dREG master merge?	True