DBNascent | Samples

SRR930681 Sample ID 1147

**Data sources**
Paper identifier	Kaikkonen2013remodeling
SRP	SRP026695
Samples	SRR930681

**Technical details**
QC score	2
Replicate	3
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	58 Mb
Stranded gene read counts	TXT file	913 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	596 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	Kdo2-Lipid A (100 ng/mL)	-6 hr	0 hr	6 hr
treatment	serum starvation (0.5% FBS)	-20 hr	0 hr	20 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	53
Read depth after trimming	23,274,349
Duplication proportion	0.64894
Proportion reads mapped	0.8745
Exon/intron ratio	2.94449
Unique read proportion	0.52792

**Bidirectionals**
Total # Tfit bidirectionals	16753
# Promoter Tfit bidirectionals	6488
# Intronic Tfit bidirectionals	5482
# Intergenic Tfit bidirectionals	3229
Total # dREG bidirectionals	13778
# Promoter dREG bidirectionals	5287
# Intronic dREG bidirectionals	4556
# Intergenic dREG bidirectionals	2737
Part of Tfit master merge?	True
Part of dREG master merge?	True