DBNascent | Samples

SRR930684 Sample ID 1148

**Data sources**
Paper identifier	Kaikkonen2013remodeling
SRP	SRP026695
Samples	SRR930684

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	90 Mb
Stranded gene read counts	TXT file	919 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-2 hr	0 hr	2 hr
treatment	serum starvation (0.5% FBS)	-15 hr	0 hr	15 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information unclear
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	49
Read depth after trimming	28,932,394
Duplication proportion	0.40179
Proportion reads mapped	0.8094
Exon/intron ratio	2.58689
Unique read proportion	0.72596

**Bidirectionals**
Total # Tfit bidirectionals	27783
# Promoter Tfit bidirectionals	8975
# Intronic Tfit bidirectionals	9428
# Intergenic Tfit bidirectionals	7395
Total # dREG bidirectionals	24154
# Promoter dREG bidirectionals	6911
# Intronic dREG bidirectionals	9221
# Intergenic dREG bidirectionals	6311
Part of Tfit master merge?	True
Part of dREG master merge?	True