DBNascent | Samples

SRR930718 Sample ID 1156

**Data sources**
Paper identifier	Kaikkonen2013remodeling
SRP accession	SRP026695
GEO accession	GSE48759
Samples	SRR930718

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	62 Mb
Stranded gene read counts	TXT file	912 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	655 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	hematopoietic progenitor cell
Clone/Individual
Strain
Genotype	PU.1 -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	Kdo2-Lipid A (100 ng/mL)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	53
Read depth after trimming	18,644,269
Duplication proportion	0.34852
Proportion reads mapped	0.8236
Exon/intron ratio	4.44818
Unique read proportion	0.68178

**Bidirectionals**
Total # Tfit bidirectionals	15867
# Promoter Tfit bidirectionals	6369
# Intronic Tfit bidirectionals	5599
# Intergenic Tfit bidirectionals	2490
Total # dREG bidirectionals	15167
# Promoter dREG bidirectionals	5817
# Intronic dREG bidirectionals	5157
# Intergenic dREG bidirectionals	2770
Part of Tfit master merge?	True
Part of dREG master merge?	True