DBNascent | Samples

SRR930720 Sample ID 1158

**Data sources**
Paper identifier	Kaikkonen2013remodeling
SRP accession	SRP026695
GEO accession	GSE48759
Samples	SRR930720

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	67 Mb
Stranded gene read counts	TXT file	911 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	694 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	hematopoietic progenitor cell
Clone/Individual
Strain
Genotype	PU.1 -/-; tamoxifen-inducible PU.1 exogenous (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	Kdo2-Lipid A (100 ng/mL)	-1 hr	0 hr	1 hr
treatment	hydroxytamoxifen (100 nM)	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	53
Read depth after trimming	21,924,705
Duplication proportion	0.42174
Proportion reads mapped	0.8274
Exon/intron ratio	4.83737
Unique read proportion	0.62937

**Bidirectionals**
Total # Tfit bidirectionals	17082
# Promoter Tfit bidirectionals	5245
# Intronic Tfit bidirectionals	6180
# Intergenic Tfit bidirectionals	3997
Total # dREG bidirectionals	16068
# Promoter dREG bidirectionals	5288
# Intronic dREG bidirectionals	5966
# Intergenic dREG bidirectionals	3711
Part of Tfit master merge?	True
Part of dREG master merge?	True