DBNascent | Samples

SRR9336633 Sample ID 59

**Data sources**
Paper identifier	Anderson2020defining
SRP accession	SRP202213
GEO accession	GSE133147
Samples	SRR9336633

**Technical details**
QC score	4
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	43 Mb
Stranded gene read counts	TXT file	909 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	451 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	3T3-L1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	35
Read depth after trimming	18,627,998
Duplication proportion	0.21348
Proportion reads mapped	0.3775
Exon/intron ratio	4.81707
Unique read proportion	0.76597

**Bidirectionals**
Total # Tfit bidirectionals	17066
# Promoter Tfit bidirectionals	7982
# Intronic Tfit bidirectionals	5284
# Intergenic Tfit bidirectionals	1772
Total # dREG bidirectionals	10430
# Promoter dREG bidirectionals	5935
# Intronic dREG bidirectionals	2520
# Intergenic dREG bidirectionals	579
Part of Tfit master merge?	True
Part of dREG master merge?	True