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SRR9336634 Sample ID 60
| Paper identifier | Anderson2020defining |
| SRP accession | SRP202213 |
| GEO accession | GSE133147 |
| Samples | SRR9336634 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 51 Mb |
| Stranded gene read counts | TXT file | 911 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 465 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | 3T3-L1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 35 |
| Read depth after trimming | 26,393,619 |
| Duplication proportion | 0.22605 |
| Proportion reads mapped | 0.3316 |
| Exon/intron ratio | 4.67548 |
| Unique read proportion | 0.78617 |
| Total # Tfit bidirectionals | 18036 |
| # Promoter Tfit bidirectionals | 8094 |
| # Intronic Tfit bidirectionals | 5900 |
| # Intergenic Tfit bidirectionals | 2057 |
| Total # dREG bidirectionals | 10758 |
| # Promoter dREG bidirectionals | 5862 |
| # Intronic dREG bidirectionals | 2764 |
| # Intergenic dREG bidirectionals | 710 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |