DBNascent | Samples

SRR9336635 Sample ID 61

**Data sources**
Paper identifier	Anderson2020defining
SRP accession	SRP202213
GEO accession	GSE133147
Samples	SRR9336635

**Technical details**
QC score	1
Replicate	3
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	101 Mb
Stranded gene read counts	TXT file	919 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	605 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	3T3-L1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	75
Read depth after trimming	54,427,092
Duplication proportion	0.28816
Proportion reads mapped	0.3981
Exon/intron ratio	3.58318
Unique read proportion	0.82278

**Bidirectionals**
Total # Tfit bidirectionals	21275
# Promoter Tfit bidirectionals	9867
# Intronic Tfit bidirectionals	6572
# Intergenic Tfit bidirectionals	3116
Total # dREG bidirectionals	13875
# Promoter dREG bidirectionals	6197
# Intronic dREG bidirectionals	4423
# Intergenic dREG bidirectionals	1497
Part of Tfit master merge?	True
Part of dREG master merge?	True