DBNascent | Samples

SRR9336640 Sample ID 66

**Data sources**
Paper identifier	Anderson2020defining
SRP accession	SRP202213
GEO accession	GSE133147
Samples	SRR9336640

**Technical details**
QC score	3
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	55 Mb
Stranded gene read counts	TXT file	909 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	418 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	3T3-L1
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	adipocyte differentiation protocol	-2 hr	0 hr	2 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	35
Read depth after trimming	27,625,295
Duplication proportion	0.26065
Proportion reads mapped	0.3723
Exon/intron ratio	3.72401
Unique read proportion	0.76965

**Bidirectionals**
Total # Tfit bidirectionals	15816
# Promoter Tfit bidirectionals	6153
# Intronic Tfit bidirectionals	6302
# Intergenic Tfit bidirectionals	1540
Total # dREG bidirectionals	9598
# Promoter dREG bidirectionals	4054
# Intronic dREG bidirectionals	3578
# Intergenic dREG bidirectionals	521
Part of Tfit master merge?	True
Part of dREG master merge?	True