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SRR9336651 Sample ID 77
| Paper identifier | Anderson2020defining |
| SRP accession | SRP202213 |
| GEO accession | GSE133147 |
| Samples | SRR9336651 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 44 Mb |
| Stranded gene read counts | TXT file | 906 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 403 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | 3T3-L1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | adipocyte differentiation protocol | -1 hr | 0 hr | 1 hr |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 2 |
| Raw read length | 35 |
| Read depth after trimming | 20,870,884 |
| Duplication proportion | 0.27674 |
| Proportion reads mapped | 0.3868 |
| Exon/intron ratio | 4.0597 |
| Unique read proportion | 0.72244 |
| Total # Tfit bidirectionals | 15161 |
| # Promoter Tfit bidirectionals | 6276 |
| # Intronic Tfit bidirectionals | 5653 |
| # Intergenic Tfit bidirectionals | 1403 |
| Total # dREG bidirectionals | 9260 |
| # Promoter dREG bidirectionals | 4074 |
| # Intronic dREG bidirectionals | 3183 |
| # Intergenic dREG bidirectionals | 533 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |