DBNascent | Samples

SRR935117 Sample ID 1102

**Data sources**
Paper identifier	Jonkers2014genome
SRP accession	SRP027411
GEO accession	GSE48895
Samples	SRR935117

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	36 Mb
Stranded gene read counts	TXT file	909 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	474 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO (0.0125%)	-50 min	0 min	50 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	22,911,350
Duplication proportion	0.65454
Proportion reads mapped	0.5671
Exon/intron ratio	2.08971
Unique read proportion	0.3553

**Bidirectionals**
Total # Tfit bidirectionals	15906
# Promoter Tfit bidirectionals	5581
# Intronic Tfit bidirectionals	5238
# Intergenic Tfit bidirectionals	3326
Total # dREG bidirectionals	11005
# Promoter dREG bidirectionals	5615
# Intronic dREG bidirectionals	2322
# Intergenic dREG bidirectionals	2183
Part of Tfit master merge?	True
Part of dREG master merge?	True