DBNascent | Samples

SRR935118 Sample ID 1103

**Data sources**
Paper identifier	Jonkers2014genome
SRP accession	SRP027411
GEO accession	GSE48895
Samples	SRR935118

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	67 Mb
Stranded gene read counts	TXT file	917 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	846 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO (0.0125%)	-50 min	0 min	50 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	48,696,176
Duplication proportion	0.64264
Proportion reads mapped	0.5716
Exon/intron ratio	2.22247
Unique read proportion	0.4108

**Bidirectionals**
Total # Tfit bidirectionals	25522
# Promoter Tfit bidirectionals	8146
# Intronic Tfit bidirectionals	8625
# Intergenic Tfit bidirectionals	6182
Total # dREG bidirectionals	19569
# Promoter dREG bidirectionals	7289
# Intronic dREG bidirectionals	5377
# Intergenic dREG bidirectionals	5416
Part of Tfit master merge?	True
Part of dREG master merge?	True