DBNascent | Samples

SRR935119 Sample ID 1104

**Data sources**
Paper identifier	Jonkers2014genome
SRP	SRP027411
Samples	SRR935119

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	38 Mb
Stranded gene read counts	TXT file	910 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	847 Kb
dREG bidirectional regions	BED file	279 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	triptolide (500 nM)	-750 s	0 s	750 s

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	19,798,427
Duplication proportion	0.57882
Proportion reads mapped	0.5721
Exon/intron ratio	2.03695
Unique read proportion	0.43416

**Bidirectionals**
Total # Tfit bidirectionals	9948
# Promoter Tfit bidirectionals	3355
# Intronic Tfit bidirectionals	3345
# Intergenic Tfit bidirectionals	1783
Total # dREG bidirectionals	6498
# Promoter dREG bidirectionals	3678
# Intronic dREG bidirectionals	1138
# Intergenic dREG bidirectionals	1067
Part of Tfit master merge?	True
Part of dREG master merge?	True