Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR935120 Sample ID 1105
| Paper identifier | Jonkers2014genome |
| SRP accession | SRP027411 |
| GEO accession | GSE48895 |
| Samples | SRR935120 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | A. thaliana |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 58 Mb |
| Stranded gene read counts | TXT file | 915 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 473 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | V6.5 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | triptolide (500 nM) | -750 s | 0 s | 750 s |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 28,784,264 |
| Duplication proportion | 0.51486 |
| Proportion reads mapped | 0.6107 |
| Exon/intron ratio | 2.02432 |
| Unique read proportion | 0.51422 |
| Total # Tfit bidirectionals | 14446 |
| # Promoter Tfit bidirectionals | 4692 |
| # Intronic Tfit bidirectionals | 4854 |
| # Intergenic Tfit bidirectionals | 2907 |
| Total # dREG bidirectionals | 10984 |
| # Promoter dREG bidirectionals | 5308 |
| # Intronic dREG bidirectionals | 2384 |
| # Intergenic dREG bidirectionals | 2311 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |