DBNascent | Samples

SRR935120 Sample ID 1105

**Data sources**
Paper identifier	Jonkers2014genome
SRP accession	SRP027411
GEO accession	GSE48895
Samples	SRR935120

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	58 Mb
Stranded gene read counts	TXT file	915 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	473 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	triptolide (500 nM)	-750 s	0 s	750 s

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	28,784,264
Duplication proportion	0.51486
Proportion reads mapped	0.6107
Exon/intron ratio	2.02432
Unique read proportion	0.51422

**Bidirectionals**
Total # Tfit bidirectionals	14446
# Promoter Tfit bidirectionals	4692
# Intronic Tfit bidirectionals	4854
# Intergenic Tfit bidirectionals	2907
Total # dREG bidirectionals	10984
# Promoter dREG bidirectionals	5308
# Intronic dREG bidirectionals	2384
# Intergenic dREG bidirectionals	2311
Part of Tfit master merge?	True
Part of dREG master merge?	True