DBNascent | Samples

SRR935123 Sample ID 1106

**Data sources**
Paper identifier	Jonkers2014genome
SRP accession	SRP027411
GEO accession	GSE48895
Samples	SRR935123

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	18 Mb
Stranded gene read counts	TXT file	896 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	188 Kb
dREG bidirectional regions	BED file	31 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	triptolide (500 nM)	-50 min	0 min	50 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	50
Read depth after trimming	22,554,508
Duplication proportion	0.8657
Proportion reads mapped	0.5116
Exon/intron ratio	1.07556
Unique read proportion	0.13555

**Bidirectionals**
Total # Tfit bidirectionals	2217
# Promoter Tfit bidirectionals	674
# Intronic Tfit bidirectionals	666
# Intergenic Tfit bidirectionals	487
Total # dREG bidirectionals	715
# Promoter dREG bidirectionals	242
# Intronic dREG bidirectionals	140
# Intergenic dREG bidirectionals	306
Part of Tfit master merge?	True
Part of dREG master merge?	True