DBNascent | Samples

SRR935124 Sample ID 1107

**Data sources**
Paper identifier	Jonkers2014genome
SRP accession	SRP027411
GEO accession	GSE48895
Samples	SRR935124

**Technical details**
QC score	4
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	24 Mb
Stranded gene read counts	TXT file	900 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	358 Kb
dREG bidirectional regions	BED file	53 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	triptolide (500 nM)	-50 min	0 min	50 min

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	50
Read depth after trimming	25,200,941
Duplication proportion	0.81398
Proportion reads mapped	0.5161
Exon/intron ratio	1.20906
Unique read proportion	0.18885

**Bidirectionals**
Total # Tfit bidirectionals	4200
# Promoter Tfit bidirectionals	1210
# Intronic Tfit bidirectionals	1518
# Intergenic Tfit bidirectionals	809
Total # dREG bidirectionals	1241
# Promoter dREG bidirectionals	500
# Intronic dREG bidirectionals	253
# Intergenic dREG bidirectionals	417
Part of Tfit master merge?	True
Part of dREG master merge?	True