DBNascent | Samples

SRR9602768 Sample ID 1407

**Data sources**
Paper identifier	Lai2020directed
SRP accession	SRP212127
GEO accession	GSE133374
Samples	SRR9602768

**Technical details**
QC score	1
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	471 Mb
Stranded gene read counts	TXT file	936 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MHT
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	Nedd4 intronic antisense oligonucleotide 2 (10 microM)	-1 day	0 day	1 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	12
Read depth after trimming	151,143,128
Duplication proportion	0.43256
Proportion reads mapped	0.889
Exon/intron ratio	3.43374
Unique read proportion	0.8345

**Bidirectionals**
Total # Tfit bidirectionals	43516
# Promoter Tfit bidirectionals	14009
# Intronic Tfit bidirectionals	11748
# Intergenic Tfit bidirectionals	14781
Total # dREG bidirectionals	51275
# Promoter dREG bidirectionals	5787
# Intronic dREG bidirectionals	21919
# Intergenic dREG bidirectionals	19459
Part of Tfit master merge?	True
Part of dREG master merge?	True