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SRR9602769 Sample ID 1408
| Paper identifier | Lai2020directed |
| SRP accession | SRP212127 |
| GEO accession | GSE133374 |
| Samples | SRR9602769 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 553 Mb |
| Stranded gene read counts | TXT file | 939 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 3 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | MHT |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | Nedd4 exonic antisense oligonucleotide 2 (10 microM) | -1 day | 0 day | 1 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 16 |
| Read depth after trimming | 189,374,682 |
| Duplication proportion | 0.47146 |
| Proportion reads mapped | 0.8941 |
| Exon/intron ratio | 3.36983 |
| Unique read proportion | 0.84153 |
| Total # Tfit bidirectionals | 48123 |
| # Promoter Tfit bidirectionals | 14264 |
| # Intronic Tfit bidirectionals | 13036 |
| # Intergenic Tfit bidirectionals | 17789 |
| Total # dREG bidirectionals | 62194 |
| # Promoter dREG bidirectionals | 5825 |
| # Intronic dREG bidirectionals | 27033 |
| # Intergenic dREG bidirectionals | 24810 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |