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SRR9602770 Sample ID 1409
| Paper identifier | Lai2020directed |
| SRP accession | SRP212127 |
| GEO accession | GSE133374 |
| Samples | SRR9602770 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 486 Mb |
| Stranded gene read counts | TXT file | 938 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 5 Mb |
| dREG bidirectional regions | BED file | 3 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | MHT |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | control antisense oligonucleotide (10 microM) | -1 day | 0 day | 1 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 27 |
| Read depth after trimming | 162,155,131 |
| Duplication proportion | 0.45862 |
| Proportion reads mapped | 0.8939 |
| Exon/intron ratio | 3.79372 |
| Unique read proportion | 0.82017 |
| Total # Tfit bidirectionals | 54525 |
| # Promoter Tfit bidirectionals | 16048 |
| # Intronic Tfit bidirectionals | 15383 |
| # Intergenic Tfit bidirectionals | 20383 |
| Total # dREG bidirectionals | 64745 |
| # Promoter dREG bidirectionals | 6098 |
| # Intronic dREG bidirectionals | 28328 |
| # Intergenic dREG bidirectionals | 25666 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |