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SRR9602772 Sample ID 1411
| Paper identifier | Lai2020directed |
| SRP accession | SRP212127 |
| GEO accession | GSE133374 |
| Samples | SRR9602772 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 168 Mb |
| Stranded gene read counts | TXT file | 929 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | MHT |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | control antisense oligonucleotide (10 microM) | -1 day | 0 day | 1 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 3 |
| Raw read length | 56 |
| Read depth after trimming | 80,067,052 |
| Duplication proportion | 0.55631 |
| Proportion reads mapped | 0.7082 |
| Exon/intron ratio | 5.33996 |
| Unique read proportion | 0.66268 |
| Total # Tfit bidirectionals | 52761 |
| # Promoter Tfit bidirectionals | 16453 |
| # Intronic Tfit bidirectionals | 16578 |
| # Intergenic Tfit bidirectionals | 16470 |
| Total # dREG bidirectionals | 39619 |
| # Promoter dREG bidirectionals | 6345 |
| # Intronic dREG bidirectionals | 15494 |
| # Intergenic dREG bidirectionals | 13770 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |