DBNascent | Samples

SRR9602773 Sample ID 1412

**Data sources**
Paper identifier	Lai2020directed
SRP accession	SRP212127
GEO accession	GSE133374
Samples	SRR9602773

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	148 Mb
Stranded gene read counts	TXT file	929 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MHT
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	Nedd4 exonic antisense oligonucleotide 3 (10 microM)	-1 day	0 day	1 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	3
Raw read length	56
Read depth after trimming	85,987,871
Duplication proportion	0.63968
Proportion reads mapped	0.675
Exon/intron ratio	5.46103
Unique read proportion	0.59657

**Bidirectionals**
Total # Tfit bidirectionals	46702
# Promoter Tfit bidirectionals	15630
# Intronic Tfit bidirectionals	14773
# Intergenic Tfit bidirectionals	12981
Total # dREG bidirectionals	34412
# Promoter dREG bidirectionals	6302
# Intronic dREG bidirectionals	13222
# Intergenic dREG bidirectionals	10962
Part of Tfit master merge?	True
Part of dREG master merge?	True