DBNascent | Samples

SRR9602774 Sample ID 1413

**Data sources**
Paper identifier	Lai2020directed
SRP accession	SRP212127
GEO accession	GSE133374
Samples	SRR9602774

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	137 Mb
Stranded gene read counts	TXT file	926 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	4 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	MHT
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	Atxn10 intronic antisense oligonucleotide 1 (10 microM)	-1 day	0 day	1 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	34
Read depth after trimming	71,128,414
Duplication proportion	0.53313
Proportion reads mapped	0.6743
Exon/intron ratio	4.02656
Unique read proportion	0.59951

**Bidirectionals**
Total # Tfit bidirectionals	51881
# Promoter Tfit bidirectionals	16830
# Intronic Tfit bidirectionals	16510
# Intergenic Tfit bidirectionals	15676
Total # dREG bidirectionals	39444
# Promoter dREG bidirectionals	6779
# Intronic dREG bidirectionals	16059
# Intergenic dREG bidirectionals	13214
Part of Tfit master merge?	True
Part of dREG master merge?	True