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SRR9825102 Sample ID 1517
| Paper identifier | Li2020signalosome |
| SRP accession | SRP216249 |
| GEO accession | GSE134800 |
| Samples | SRR9825102 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 25 Mb |
| Organism | R. norvegicus |
| Sample type | primary cell |
| Cell type | cardiomyocyte |
| Clone/Individual | |
| Strain | |
| Genotype | Srf (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 3 |
| Raw read length | 75 |
| Read depth after trimming | 45,863,890 |
| Duplication proportion | 0.92347 |
| Proportion reads mapped | 0.8236 |
| Exon/intron ratio | 6.9779 |
| Unique read proportion | 0.08435 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |