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SRR9833433 Sample ID 2588
| Paper identifier | Wan2020h2bg53d |
| SRP accession | SRP216383 |
| GEO accession | GSE134864 |
| Samples | SRR9833433 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 121 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | S2VP10 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Replicate information not clear |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 4 |
| Raw read length | 63 |
| Read depth after trimming | 30,275,213 |
| Duplication proportion | 0.37259 |
| Proportion reads mapped | 0.9281 |
| Exon/intron ratio | 8.15332 |
| Unique read proportion | 0.49491 |
| Total # Tfit bidirectionals | 35924 |
| # Promoter Tfit bidirectionals | 14519 |
| # Intronic Tfit bidirectionals | 15943 |
| # Intergenic Tfit bidirectionals | 6584 |
| Total # dREG bidirectionals | 29111 |
| # Promoter dREG bidirectionals | 9153 |
| # Intronic dREG bidirectionals | 13705 |
| # Intergenic dREG bidirectionals | 5822 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |