DBNascent | Samples

SRR9833433 Sample ID 2588

**Data sources**
Paper identifier	Wan2020h2bg53d
SRP accession	SRP216383
GEO accession	GSE134864
Samples	SRR9833433

**Technical details**
QC score	2
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	121 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	S2VP10
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate information not clear
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	4
Raw read length	63
Read depth after trimming	30,275,213
Duplication proportion	0.37259
Proportion reads mapped	0.9281
Exon/intron ratio	8.15332
Unique read proportion	0.49491

**Bidirectionals**
Total # Tfit bidirectionals	35924
# Promoter Tfit bidirectionals	14519
# Intronic Tfit bidirectionals	15943
# Intergenic Tfit bidirectionals	6584
Total # dREG bidirectionals	29111
# Promoter dREG bidirectionals	9153
# Intronic dREG bidirectionals	13705
# Intergenic dREG bidirectionals	5822
Part of Tfit master merge?	True
Part of dREG master merge?	True