DBNascent | Samples

SRR988329 Sample ID 1449

**Data sources**
Paper identifier	Li2013ncor
SRP	SRP029986
Samples	SRR988329

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	29 Mb
Stranded gene read counts	TXT file	904 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	760 Kb
dREG bidirectional regions	BED file	259 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6J
Genotype	NCoR fl/fl
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	replicate info not clear, but implies biological in paper
Analysis notes	Ran qc redo nextflow; Originally labeled and processed as technical replicates, but paper implies biological - kept tech rep processed data just in case but removed SRZ labels from metadata

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	34
Read depth after trimming	7,749,271
Duplication proportion	0.34462
Proportion reads mapped	0.7004
Exon/intron ratio	2.40909
Unique read proportion	0.61828

**Bidirectionals**
Total # Tfit bidirectionals	9009
# Promoter Tfit bidirectionals	3975
# Intronic Tfit bidirectionals	2846
# Intergenic Tfit bidirectionals	1054
Total # dREG bidirectionals	6028
# Promoter dREG bidirectionals	3266
# Intronic dREG bidirectionals	1426
# Intergenic dREG bidirectionals	711
Part of Tfit master merge?	True
Part of dREG master merge?	True