DBNascent | Samples

SRR988331 Sample ID 1451

**Data sources**
Paper identifier	Li2013ncor
SRP	SRP029986
Samples	SRR988331

**Technical details**
QC score	4
Replicate	3
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	30 Mb
Stranded gene read counts	TXT file	907 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	390 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6J
Genotype	NCoR fl/fl
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	replicate info not clear, but implies biological in paper
Analysis notes	Ran qc redo nextflow; Originally labeled and processed as technical replicates, but paper implies biological - kept tech rep processed data just in case but removed SRZ labels from metadata

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	34
Read depth after trimming	8,362,505
Duplication proportion	0.44436
Proportion reads mapped	0.759
Exon/intron ratio	2.72756
Unique read proportion	0.48811

**Bidirectionals**
Total # Tfit bidirectionals	12948
# Promoter Tfit bidirectionals	5442
# Intronic Tfit bidirectionals	3999
# Intergenic Tfit bidirectionals	1992
Total # dREG bidirectionals	9062
# Promoter dREG bidirectionals	4679
# Intronic dREG bidirectionals	2236
# Intergenic dREG bidirectionals	1342
Part of Tfit master merge?	True
Part of dREG master merge?	True