DBNascent | Samples

SRR988332 Sample ID 1452

**Data sources**
Paper identifier	Li2013ncor
SRP	SRP029986
Samples	SRR988332

**Technical details**
QC score	4
Replicate	4
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	28 Mb
Stranded gene read counts	TXT file	904 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	910 Kb
dREG bidirectional regions	BED file	288 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6J
Genotype	NCoR fl/fl
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	replicate info not clear, but implies biological in paper
Analysis notes	Ran qc redo nextflow; Originally labeled and processed as technical replicates, but paper implies biological - kept tech rep processed data just in case but removed SRZ labels from metadata

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	34
Read depth after trimming	7,467,000
Duplication proportion	0.37327
Proportion reads mapped	0.7381
Exon/intron ratio	2.66421
Unique read proportion	0.59893

**Bidirectionals**
Total # Tfit bidirectionals	10776
# Promoter Tfit bidirectionals	4355
# Intronic Tfit bidirectionals	3368
# Intergenic Tfit bidirectionals	1641
Total # dREG bidirectionals	6686
# Promoter dREG bidirectionals	3469
# Intronic dREG bidirectionals	1590
# Intergenic dREG bidirectionals	1004
Part of Tfit master merge?	True
Part of dREG master merge?	True