DBNascent | Samples

SRR988335 Sample ID 1455

**Data sources**
Paper identifier	Li2013ncor
SRP	SRP029986
Samples	SRR988335

**Technical details**
QC score	5
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Timecourse	True
Control/Experimental	experimental
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	20 Mb
Stranded gene read counts	TXT file	900 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	400 Kb
dREG bidirectional regions	BED file	90 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6J
Genotype	NCoR fl/fl; LysM-Cre +/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	replicate info not clear, but implies biological in paper
Analysis notes	Ran qc redo nextflow; Originally labeled and processed as technical replicates, but paper implies biological - kept tech rep processed data just in case but removed SRZ labels from metadata

**Sample metrics**
Sample QC score	5
Sample NRO score	1
Raw read length	34
Read depth after trimming	6,135,801
Duplication proportion	0.40121
Proportion reads mapped	0.526
Exon/intron ratio	2.37107
Unique read proportion	0.55142

**Bidirectionals**
Total # Tfit bidirectionals	4745
# Promoter Tfit bidirectionals	1897
# Intronic Tfit bidirectionals	1610
# Intergenic Tfit bidirectionals	533
Total # dREG bidirectionals	2083
# Promoter dREG bidirectionals	1095
# Intronic dREG bidirectionals	488
# Intergenic dREG bidirectionals	316
Part of Tfit master merge?	True
Part of dREG master merge?	True