DBNascent | Samples

SRR988337 Sample ID 1458

**Data sources**
Paper identifier	Li2013ncor
SRP accession	SRP029986
GEO accession	GSE50944
Samples	SRR988337

**Technical details**
QC score	5
Replicate	4
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	15 Mb
Stranded gene read counts	TXT file	895 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	141 Kb
dREG bidirectional regions	BED file	25 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6J
Genotype	NCoR fl/fl; LysM-Cre +/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	replicate info not clear, but implies biological in paper
Analysis notes	Ran qc redo nextflow; Originally labeled and processed as technical replicates, but paper implies biological - kept tech rep processed data just in case but removed SRZ labels from metadata

**Sample metrics**
Sample QC score	5
Sample NRO score	1
Raw read length	34
Read depth after trimming	3,925,776
Duplication proportion	0.48695
Proportion reads mapped	0.5486
Exon/intron ratio	2.4
Unique read proportion	0.42252

**Bidirectionals**
Total # Tfit bidirectionals	1677
# Promoter Tfit bidirectionals	552
# Intronic Tfit bidirectionals	654
# Intergenic Tfit bidirectionals	185
Total # dREG bidirectionals	593
# Promoter dREG bidirectionals	200
# Intronic dREG bidirectionals	163
# Intergenic dREG bidirectionals	165
Part of Tfit master merge?	True
Part of dREG master merge?	True