DBNascent | Samples

SRR9961457 Sample ID 2798

**Data sources**
Paper identifier	Zhang2019fundamental
SRP accession	SRP193758
GEO accession	GSE130266
Samples	SRR9961457

**Technical details**
QC score	4
Replicate	3
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 forward
Reverse complemented?	True
Mapped strandedness	read1 forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	44 Mb
Stranded gene read counts	TXT file	914 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	264 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	splenic B cell
Clone/Individual
Strain	C57BL/6
Genotype	Aid -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	76
Read depth after trimming	20,024,519
Duplication proportion	0.80789
Proportion reads mapped	0.8055
Exon/intron ratio	1.8956
Unique read proportion	0.25678

**Bidirectionals**
Total # Tfit bidirectionals	12729
# Promoter Tfit bidirectionals	3502
# Intronic Tfit bidirectionals	5502
# Intergenic Tfit bidirectionals	1827
Total # dREG bidirectionals	6124
# Promoter dREG bidirectionals	2069
# Intronic dREG bidirectionals	2321
# Intergenic dREG bidirectionals	1128
Part of Tfit master merge?	False
Part of dREG master merge?	False