DBNascent | Samples

SRZ014283 Sample ID 481

**Data sources**
Paper identifier	Core2008nascent
SRP accession	SRP000629
GEO accession	GSE13518
Samples	SRR014283
	SRR014284
	SRR014285

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	38 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	870 Kb
dREG bidirectional regions	BED file	272 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	IMR90
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	33
Read depth after trimming	10,696,138
Duplication proportion	0.38476
Proportion reads mapped	0.6775
Exon/intron ratio	1.976
Unique read proportion	0.60438

**Bidirectionals**
Total # Tfit bidirectionals	10058
# Promoter Tfit bidirectionals	4637
# Intronic Tfit bidirectionals	4029
# Intergenic Tfit bidirectionals	1365
Total # dREG bidirectionals	6330
# Promoter dREG bidirectionals	3946
# Intronic dREG bidirectionals	1878
# Intergenic dREG bidirectionals	809
Part of Tfit master merge?	True
Part of dREG master merge?	True