Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRZ014286 Sample ID 482
| Paper identifier | Core2008nascent |
| SRP accession | SRP000629 |
| GEO accession | GSE13518 |
| Samples | SRR014286 |
| SRR014287 |
| QC score | 4 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 34 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 339 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | IMR90 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 33 |
| Read depth after trimming | 8,571,768 |
| Duplication proportion | 0.2694 |
| Proportion reads mapped | 0.6225 |
| Exon/intron ratio | 1.65238 |
| Unique read proportion | 0.69949 |
| Total # Tfit bidirectionals | 11900 |
| # Promoter Tfit bidirectionals | 5488 |
| # Intronic Tfit bidirectionals | 4810 |
| # Intergenic Tfit bidirectionals | 1644 |
| Total # dREG bidirectionals | 7910 |
| # Promoter dREG bidirectionals | 5092 |
| # Intronic dREG bidirectionals | 2287 |
| # Intergenic dREG bidirectionals | 913 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |