DBNascent | Samples

SRZ073011 Sample ID 1427

**Data sources**
Paper identifier	Larschan2011x
SRP accession	SRP006578
GEO accession	GSE25887
Samples	SRR073011
	SRR073012
	SRR073013
	SRR073014

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	90 Mb
Stranded gene read counts	TXT file	732 Kb
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	D. melanogaster
Sample type	cell line
Cell type	S2
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	dsRNA EGFP (225 microg/20 million cells)	-6 day	0 day	6 day

**Extended notes**
Pipeline info and software versions
Sample notes	Library prep not specified - just "same as Core 2008"
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	36
Read depth after trimming	81,114,721
Duplication proportion	0.73288
Proportion reads mapped	0.4047
Exon/intron ratio	3.48334
Unique read proportion	0.39819

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False