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SRZ073015 Sample ID 1428
| Paper identifier | Larschan2011x |
| SRP accession | SRP006578 |
| GEO accession | GSE25887 |
| Samples | SRR073015 |
| SRR073016 |
| QC score | 3 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 45 Mb |
| Stranded gene read counts | TXT file | 721 Kb |
| All data files | ZIP archive | |
| Organism | D. melanogaster |
| Sample type | cell line |
| Cell type | S2 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | dsRNA EGFP (225 microg/20 million cells) | -6 day | 0 day | 6 day |
| Pipeline info and software versions | |
| Sample notes | Library prep not specified - just "same as Core 2008" |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 36 |
| Read depth after trimming | 32,585,543 |
| Duplication proportion | 0.60213 |
| Proportion reads mapped | 0.2724 |
| Exon/intron ratio | 1.99177 |
| Unique read proportion | 0.37866 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |