SRZ073021 Sample ID 1430

Data sources
Paper identifier Larschan2011x
SRP accession SRP006578
GEO accession GSE25887
Samples SRR073021
SRR073022
Technical details
QC score 3
Replicate 2
Protocol GRO-seq
Library prep ligation
Spike-in None
Single/Paired end single
Raw strandedness forward
Reverse complemented? False
Mapped strandedness forward
Timecourse False
Control/Experimental experimental
Wildtype & Untreated? False
Outlier No
Unusable No
Downloads
TDF visualization file TDF file 52 Mb
Stranded gene read counts TXT file 723 Kb
Unstranded bidirectional read counts TXT file
Tfit bidirectional regions BED file
dREG bidirectional regions BED file
All data files ZIP archive
Cellular details
Organism D. melanogaster
Sample type cell line
Cell type S2
Clone/Individual
Strain
Genotype
Construct
Conditions and treatments
Condition type Treatment Start time End time Duration
treatment dsRNA Msl2 (225 microg/20 million cells) -6 day 0 day 6 day
Extended notes
Pipeline info and software versions
Sample notes Library prep not specified - just "same as Core 2008"
Analysis notes
Sample metrics
Sample QC score 3
Sample NRO score 1
Raw read length 36
Read depth after trimming 34,282,658
Duplication proportion 0.62723
Proportion reads mapped 0.3253
Exon/intron ratio 2.2843
Unique read proportion 0.37707
Bidirectionals
Total # Tfit bidirectionals None
# Promoter Tfit bidirectionals None
# Intronic Tfit bidirectionals None
# Intergenic Tfit bidirectionals None
Total # dREG bidirectionals None
# Promoter dREG bidirectionals None
# Intronic dREG bidirectionals None
# Intergenic dREG bidirectionals None
Part of Tfit master merge? False
Part of dREG master merge? False