DBNascent | Samples

SRZ097854 Sample ID 1852

**Data sources**
Paper identifier	Min2011regulating
SRP accession	SRP005604
GEO accession	GSE27037
Samples	SRR097854
	SRR097855
	SRR097856
	SRR097857

**Technical details**
QC score	5
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	17 Mb
Stranded gene read counts	TXT file	900 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	549 Kb
dREG bidirectional regions	BED file	147 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain	C57BL/6(f) x 129/Sv(m)
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	5
Sample NRO score	1
Raw read length	36
Read depth after trimming	4,206,486
Duplication proportion	0.40366
Proportion reads mapped	0.6317
Exon/intron ratio	2.49057
Unique read proportion	0.53645

**Bidirectionals**
Total # Tfit bidirectionals	6520
# Promoter Tfit bidirectionals	2745
# Intronic Tfit bidirectionals	1793
# Intergenic Tfit bidirectionals	1015
Total # dREG bidirectionals	3433
# Promoter dREG bidirectionals	2195
# Intronic dREG bidirectionals	482
# Intergenic dREG bidirectionals	445
Part of Tfit master merge?	True
Part of dREG master merge?	True