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SRZ097858 Sample ID 1853
| Paper identifier | Min2011regulating |
| SRP accession | SRP005604 |
| GEO accession | GSE27037 |
| Samples | SRR097858 |
| SRR097859 | |
| SRR097860 | |
| SRR097861 |
| QC score | 5 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | A. thaliana |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 18 Mb |
| Stranded gene read counts | TXT file | 901 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 625 Kb |
| dREG bidirectional regions | BED file | 170 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | V6.5 |
| Strain | C57BL/6(f) x 129/Sv(m) |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 5 |
| Sample NRO score | 1 |
| Raw read length | 36 |
| Read depth after trimming | 4,438,796 |
| Duplication proportion | 0.39741 |
| Proportion reads mapped | 0.6572 |
| Exon/intron ratio | 2.42373 |
| Unique read proportion | 0.5513 |
| Total # Tfit bidirectionals | 7412 |
| # Promoter Tfit bidirectionals | 3170 |
| # Intronic Tfit bidirectionals | 2061 |
| # Intergenic Tfit bidirectionals | 1146 |
| Total # dREG bidirectionals | 3965 |
| # Promoter dREG bidirectionals | 2492 |
| # Intronic dREG bidirectionals | 564 |
| # Intergenic dREG bidirectionals | 536 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |