DBNascent | Samples

SRZ097858 Sample ID 1852

**Data sources**
Paper identifier	Min2011regulating
SRP	SRP005604
Samples	SRR097858
	SRR097859
	SRR097860
	SRR097861

**Technical details**
QC score	5
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	A. thaliana
Single/Paired end	single
Timecourse	False
Control/Experimental	control
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	18 Mb
Stranded gene read counts	TXT file	901 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	625 Kb
dREG bidirectional regions	BED file	170 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	V6.5
Strain	C57BL/6(f) x 129/Sv(m)
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	5
Sample NRO score	1
Raw read length	36
Read depth after trimming	4,438,796
Duplication proportion	0.39741
Proportion reads mapped	0.6572
Exon/intron ratio	2.42373
Unique read proportion	0.5513

**Bidirectionals**
Total # Tfit bidirectionals	7412
# Promoter Tfit bidirectionals	3170
# Intronic Tfit bidirectionals	2061
# Intergenic Tfit bidirectionals	1146
Total # dREG bidirectionals	3965
# Promoter dREG bidirectionals	2492
# Intronic dREG bidirectionals	564
# Intergenic dREG bidirectionals	536
Part of Tfit master merge?	True
Part of dREG master merge?	True