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SRZ10004438 Sample ID 185
| Paper identifier | Bahat2019targeting |
| SRP accession | SRP218860 |
| GEO accession | GSE136024 |
| Samples | SRR10004438 |
| SRR10004439 | |
| SRR10004440 | |
| SRR10004441 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | random primed |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HeLa |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -90 min | 0 min | 90 min |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Unstranded - library prep may not have been stranded (unclear in protocol), but good data otherwise |
| Sample QC score | 2 |
| Sample NRO score | 3 |
| Raw read length | 84 |
| Read depth after trimming | 123,610,497 |
| Duplication proportion | 0.51893 |
| Proportion reads mapped | 0.9241 |
| Exon/intron ratio | 3.83974 |
| Unique read proportion | 0.61111 |
| Total # Tfit bidirectionals | 60430 |
| # Promoter Tfit bidirectionals | 1542 |
| # Intronic Tfit bidirectionals | 37986 |
| # Intergenic Tfit bidirectionals | 16677 |
| Total # dREG bidirectionals | 21908 |
| # Promoter dREG bidirectionals | 4015 |
| # Intronic dREG bidirectionals | 6901 |
| # Intergenic dREG bidirectionals | 9612 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |